Target intelligence / Profile preview

Plasmodium falciparum cyclin-dependent-like kinase 3 (PfCLK3)

Target
PfCLK3
Molecular classification
Enzyme, Kinase, Cyclin-dependent-like kinase, Protein kinase, CMGC kinase family
01

Overview

Plasmodium falciparum cyclin-dependent-like kinase 3 (PfCLK3) is a member of the cyclin-dependent like protein kinase family in P. falciparum, classified within the CMGC kinase superfamily. PfCLK3 plays a crucial role in pre-mRNA splicing and processing, which is essential for the parasite’s development across multiple life stages including asexual blood stages, liver stages, and sexual gametocytes. The kinase is structurally related to eukaryotic cyclin-dependent kinases but exhibits unique properties in Plasmodium, such as its essentiality for survival and regulatory role in gene expression via RNA splicing. PfCLK3 and its inhibitors have emerged as validated antimalarial drug targets, showing curative, prophylactic, and transmission-blocking potential by halting parasite development through the inhibition of gene splicing machinery. Selective inhibitors like TCMDC-135051 have shown multistage activity, high selectivity over human kinases, reduction of essential transcripts, and parasite clearance in preclinical models, supporting their further development as antimalarials.

Other names
CLK3cyclin-dependent-like kinase CLK3Pf3D7_1114700PF11_0156
02

Mechanism of action

Inhibition of PfCLK3 blocks pre-mRNA splicing, preventing production of essential parasite transcripts and leading to death of blood and liver stage parasites and transmission stages

03

Biological functions

Regulation of pre-mRNA splicingCell cycle regulationTranscriptional controlChromatin modification
04

Disease associations

Infection (malaria)Transmission blocking (malaria)Prophylactic, curative roles in Plasmodium infection
05

Safety considerations

Selectivity over human homologs (human CLK3): the best studied inhibitor TCMDC-135051 is approximately 100-fold less active against human CLK3, limiting toxicityPotential for drug resistanceNotable safety issues for human use have not yet emerged but careful safety profiling required
06

Interacting drugs

TCMDC-135051

1 more in the full profile.

07

Biomarkers

Downregulation of >400 intron-containing parasite gene transcripts upon PfCLK3 inhibitionEfficacy monitored by parasite clearance in malaria studiesExpression levels of PfCLK3 and splicing markers in Plasmodium

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