Target intelligence / Profile preview

Prune exopolyphosphatase 1 (PRUNE1)

Target
PRUNE1
Molecular classification
Enzyme, DHH phosphoesterase family, Exopolyphosphatase, Phosphodiesterase
01

Overview

Prune exopolyphosphatase 1 (PRUNE1) is an enzyme and member of the DHH phosphoesterase superfamily with both exopolyphosphatase and phosphodiesterase activities. Its N-terminal DHH domain hydrolyzes short-chain polyphosphates, and it also acts on the cyclic nucleotides cAMP and cGMP. Highly expressed during fetal neurodevelopment and in various cancers, PRUNE1 regulates cell proliferation, migration, and cytoskeletal organization via interactions with key signaling modulators including GSK-3β and Nm23-H1, influencing pathways such as Wnt and TGF-β, as well as processes like EMT. Pathogenic mutations cause a recessive neurodevelopmental disorder (NMIHBA), while overexpression is linked to tumor progression and metastasis. PRUNE1 is being explored as a therapeutic target for both cancer (inhibition) and rare neurodevelopmental diseases (functional rescue or modulation), but its pleiotropic roles pose development and safety challenges.

Other names
PRUNEDRES-17DRES17hPruneHTCD37H-PRUNEDrosophila-related expressed sequence 17protein prune homolog 1NMIHBAexopolyphosphatase PRUNE1
02

Mechanism of action

Inhibition of PRUNE1 phosphodiesterase or exopolyphosphatase activity to suppress cell migration and metastasis (e.g., by AA7.1 or dipyridamole); Disruption of PRUNE1–protein interactions (e.g., inhibition of signaling partnerships, such as with GSK-3β or Nm23-H1)

03

Biological functions

Hydrolysis of short-chain polyphosphatesPhosphodiesterase activity on cAMP and cGMPRegulation of cell proliferationRegulation of cell migration and motilityModulation of epithelial–mesenchymal transition (EMT)Regulation of cytoskeletal rearrangementModulation of canonical Wnt and TGF-β signaling pathwaysRole in neurodevelopment (embryonic neural development, synaptogenesis, neurogenesis)
04

Disease associations

Cancer (various solid tumors, notably metastatic medulloblastoma, neuroblastoma, breast cancer)Neurodevelopmental disorders (NMIHBA: neurodevelopmental disorder with microcephaly, hypotonia, and variable brain anomalies)Other (cardiac and vascular embryonic defects in mouse models)
05

Safety considerations

Essential for normal neurodevelopment; systemic inhibition may pose risk of neurodevelopmental toxicity and embryonic defectsPotential cardiovascular and hematopoietic effects (seen in mouse knockout models)Heterogeneity of pathogenic variants complicates prediction of on-target toxicity in different patients
06

Interacting drugs

Dipyridamole (phosphodiesterase inhibitor)

2 more in the full profile.

07

Biomarkers

PRUNE1 mRNA and protein expression (used to define metastatic risk and prognosis in medulloblastoma and other cancers)OTX2 and SNAIL levels (downstream pathway markers in tumor models)PTEN (downregulated upon PRUNE1 activation, restored on PRUNE1 inhibition)

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