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Receptor-binding motif of spike glycoprotein

Molecular classification
Other (peptide motif), Structural motif (within viral fusion protein)
01

Overview

The **receptor-binding motif (RBM) of the spike glycoprotein** is a subregion within the larger receptor-binding domain (RBD) of the coronavirus spike (S) protein, most notably in SARS-CoV and SARS-CoV-2[9]. The RBM is the specific structural motif that directly contacts the host cell surface receptor, such as angiotensin-converting enzyme 2 (ACE2), mediating viral entry[2][7][9][10]. While the spike glycoprotein as a whole is a major antiviral and vaccine target, the RBM itself is not classified as an independent molecular target but rather as a functional "hotspot" within the RBD for virus-receptor interaction and antibody recognition[6][9]. The RBM is crucial for host specificity, infectivity, and is a focus for understanding viral evolution, immune escape, and the development of broadly neutralizing antibodies[7][9]. However, it is a motif/region, not a standalone protein or receptor. **Note:** This is not a canonical molecular target like a receptor, transporter, or enzyme, but a motif within the spike glycoprotein's RBD. For most structured databases or therapeutic targeting, "spike glycoprotein (S)" or "receptor-binding domain of spike glycoprotein (RBD)" would be the correct, actionable entries, not "receptor-binding motif of spike glycoprotein" on its own[1][7][9].

Other names
RBM of spike glycoproteinReceptor-binding motif of S proteinRBM (for short)Motif within the receptor-binding domain (RBD) of spike glycoprotein
02

Mechanism of action

Drugs/antibodies that block the RBD-RBM interface prevent spike protein attachment to ACE2, inhibiting viral entry Vaccine-induced antibodies target the RBD/RBM to neutralize virus

03

Biological functions

Mediates direct interaction with host cell surface receptor (ACE2 in the case of SARS-CoV and SARS-CoV-2)Key determinant of viral attachment and specificity to host cells
04

Disease associations

Infection (e.g., COVID-19, SARS)Other (host range/tropism determinant for viral transmission)
05

Safety considerations

None specific to RBM, but viral mutations in RBM can lead to immune escape, affecting vaccine and antibody efficacy
06

Interacting drugs

Not directly targeted as a motif; drugs/antibodies target the receptor-binding domain (RBD), which contains the RBM

1 more in the full profile.

07

Biomarkers

Wild-type or mutant sequences in the RBM are monitored for immune escape, resistance, and viral infectivitySerology (antibodies to RBD/RBM epitopes)

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