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SARS-CoV-2 non-structural protein 16 2′-O-methyltransferase (Nsp16)

Target
Nsp16
Molecular classification
Enzyme [1], Methyltransferase [1, 6], Transferase [8], Rossmann-fold protein [6]
01

Overview

SARS-CoV-2 non-structural protein 16 (Nsp16) is a 2′-O-methyltransferase (2′-O-MTase) that plays a pivotal role in the viral life cycle by modifying the 5′ end of viral mRNA [1, 2]. In complex with its essential cofactor Nsp10, Nsp16 catalyzes the transfer of a methyl group from S-adenosyl-L-methionine (SAM) to the 2′-O-ribose position of the first nucleotide of the mRNA cap structure, converting Cap-0 to Cap-1 [3, 4]. This modification is a sophisticated immune evasion strategy that allows viral RNA to mimic host mRNA, thereby avoiding detection by cytoplasmic innate immune sensors such as MDA5 and IFIT proteins [1, 7]. By preventing the activation of the host's type I interferon response, Nsp16 ensures efficient viral replication and protein synthesis [2, 8]. Due to its high conservation across coronaviruses and its critical role in pathogenesis, Nsp16 is considered a prime target for the development of broad-spectrum antiviral therapeutics [4, 6]. Small molecule inhibitors targeting the SAM-binding pocket or the Nsp10-Nsp16 interface aim to restore the host's ability to recognize and clear the virus [3, 5].

Other names
2′-O-methyltransferase2′-O-MTasemRNA cap 2′-O-methyltransferasensp16non-structural protein 16SARS-CoV-2 Nsp16 2′-O-methyltransferase
02

Mechanism of action

Inhibition of the 2′-O-methylation of the viral mRNA cap, preventing the conversion of Cap-0 to Cap-1, which leads to the recognition of viral RNA by host innate immune sensors (e.g., MDA5, IFIT1) and subsequent viral clearance [1, 2, 3].

03

Biological functions

RNA capping [2, 8]Immune evasion [1, 2]Viral replication [2, 4]Host mRNA splicing disruption [2]
04

Disease associations

Infection (COVID-19) [1, 3]
05

Safety considerations

Cross-reactivity with host methyltransferases (e.g., MTr1) [2, 7]Off-target effects on host mRNA capping [1, 2]Drug-induced toxicity (e.g., weight loss with tubercidin) [2]
06

Interacting drugs

Sinefungin [1, 4]

4 more in the full profile.

07

Biomarkers

SARS-CoV-2 viral load [2, 5]IFIT1 expression [1, 2]Type I interferon levels [2, 3]

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