Target intelligence / Profile preview

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) (SARS-CoV-2)

Target
SARS-CoV-2
Molecular classification
Virus, Viral protease (Mpro, PLpro), RNA-dependent RNA polymerase, Viral glycoprotein (Spike protein), Enveloped RNA virus
01

Overview

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is an enveloped, positive-sense, single-stranded RNA virus that causes the coronavirus disease 2019 (COVID-19). It belongs to the Betacoronavirus genus and is characterized by large spike (S) glycoproteins that mediate viral entry by binding to the host's Angiotensin-converting enzyme 2 (ACE2) receptor. The viral genome encodes several essential non-structural proteins, including the main protease (Mpro) and RNA-dependent RNA polymerase (RdRp), which are primary targets for therapeutic intervention. Infection triggers a wide range of clinical manifestations, from asymptomatic or mild respiratory symptoms to severe pneumonia and multi-organ failure, often exacerbated by a systemic hyper-inflammatory response known as a cytokine storm. Therapeutic management involves direct-acting antivirals that inhibit viral replication, monoclonal antibodies that neutralize the spike protein, and host-directed therapies to mitigate lung injury and systemic inflammation.

Other names
2019-nCoVNovel coronavirus2019 novel coronavirusHCoV-19SARS-2COVID-19 virus
02

Mechanism of action

Direct-acting antivirals inhibit viral replication through RNA-dependent RNA polymerase (RdRp) inhibition (Remdesivir, Molnupiravir) or main protease (Mpro/3CLpro) inhibition (Nirmatrelvir). Monoclonal antibodies block viral entry by binding to the receptor-binding domain of the spike protein, preventing interaction with ACE2. Host-directed therapies target downstream inflammatory pathways via JAK inhibition (Baricitinib) or IL-6 receptor blockade (Tocilizumab) to prevent cytokine-mediated tissue damage.

03

Biological functions

Viral host cell entry via spike-ACE2 bindingViral genome replicationViral assembly and buddingPolyprotein proteolytic processingInhibition of host innate immune responseEndocytosis and membrane fusion
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Disease associations

COVID-19InfectionAcute respiratory distress syndrome (ARDS)PneumoniaSystemic inflammatory response syndromeLong COVID
05

Safety considerations

Viral mutation and emergence of variants of concern leading to drug resistanceDrug-drug interactions, particularly with ritonavir-boosted regimens via CYP3A4 inhibitionHepatotoxicity (elevated transaminases)Potential mutagenicity (associated with molnupiravir)Hypersensitivity and infusion-related reactions with monoclonal antibodiesIncreased risk of secondary infections with immunomodulators
06

Interacting drugs

Remdesivir

11 more in the full profile.

07

Biomarkers

Viral load (RT-PCR cycle threshold)SARS-CoV-2 antigen levelsAnti-spike (S) protein antibodiesAnti-nucleocapsid (N) protein antibodiesC-reactive protein (CRP)Interleukin-6 (IL-6)D-dimerLactate dehydrogenase (LDH)Absolute lymphocyte count (Lymphopenia)

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