Target intelligence / Profile preview

SF3B1 K700E neoantigen (SF3B1ⁱ⁰⁰⁰ᴿ neoantigen)

Target
SF3B1ⁱ⁰⁰⁰ᴿ neoantigen
Molecular classification
Other (neoantigen from spliceosome protein mutation)
01

Overview

The SF3B1 K700E neoantigen arises from a recurrent hotspot mutation (lysine to glutamic acid at position 700) in the SF3B1 gene, a core component of the U2 small nuclear ribonucleoprotein (snRNP) in the spliceosome. This mutation, found in ~20% of MDS patients (80% of MDS with ringed sideroblasts) and associated with progression to AML, generates a leukemia-specific peptide neoantigen naturally processed and presented by HLA-A*02:01 or HLA-B*40:01 on mutant cancer cells, including leukemic stem cells. It enables highly specific CD8+ T-cell recognition and killing by engineered TCR-T cells, sparing wild-type cells, making it a promising shared target for T-cell immunotherapy in SF3B1-mutated myeloid malignancies. The mutation also induces aberrant RNA splicing, affecting pathways like cell proliferation and immune regulation.

Other names
SF3B1K700E neoantigenSF3B1ⁱ⁰⁰⁰ᴿ mutant peptide
02

Mechanism of action

T-cell receptor (TCR)-mediated recognition and killing of mutant cells (HLA-A*02:01 or HLA-B*40:01 restricted)

03

Biological functions

RNA splicing (altered by mutation)Immune recognition (as neoantigen)
04

Disease associations

Cancer (MDS, AML, myeloid neoplasms)
05

Safety considerations

Potential off-target effects on wild-type SF3B1-expressing cells (though TCRs show high specificity, ~4 orders of magnitude)graft-versus-host disease risk in broader T-cell therapies
06

Biomarkers

SF3B1 K700E mutation (for patient selection in MDS/AML, present in ~20% MDS and ~80% MDS-RS)HLA-A*02:01 or HLA-B*40:01 alleles

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