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Small nucleolar RNA host gene 3 (SNHG3)

Target
SNHG3
Molecular classification
Long non-coding RNA (lncRNA), Small nucleolar RNA (snoRNA) host gene, Other
01

Overview

Small nucleolar RNA host gene 3 (SNHG3) is a long non-coding RNA primarily known for its role as a molecular scaffold and competing endogenous RNA (ceRNA), sequestering multiple tumor-suppressor microRNAs and thereby derepressing oncogenic pathways and gene products such as c-MYC and BMI1[1][3][4]. SNHG3 is frequently overexpressed in a broad array of cancers, where it drives cell proliferation, cell cycle progression, migration, invasion, apoptosis resistance, and drug resistance[1][3][4][5][7]. Epigenetically, SNHG3 exerts effects by binding and recruiting chromatin-modifying proteins like EZH2 to silence tumor suppressor loci via DNA methylation and histone modification[3][4]. In normal physiology, SNHG3 is essential for embryonic stem cell pluripotency, partly via interaction with core stemness regulators Nanog and Oct4, and participates in metabolic regulation[2][6]. Given its widespread oncogenic functions and ability to modulate key regulatory networks, SNHG3 is a focus of ongoing research as both a potential therapeutic target and cancer biomarker, though concerns regarding biological specificity and safety remain[2][4][6][7].

Other names
U17HGU17HG-ANCRNA00014non-protein coding RNA 14RNU17CRNU17DU17HG-ABU17 small nucleolar RNA hostsmall nucleolar RNA host gene (non-protein coding) 3small nucleolar RNA host gene 3 (non-protein coding)SNHG3
02

Mechanism of action

ceRNA activity (sponging tumor-suppressor miRNAs which leads to upregulation of oncogenic targets such as c-MYC, Rab22a, BMI1, etc.)[1][3][4]; Epigenetic silencing (recruitment of EZH2 to silence tumor suppressor gene promoters including KLF2, p21, MED18)[3][4]; Modulating transcription factor activity (interactions with E2F1, Nanog, Oct4, among others)[2][4]; Regulation of protein stability (via ubiquitination, e.g., SND1 in lipid metabolism models)[6]

03

Biological functions

Gene expression regulation via miRNA sponging (competing endogenous RNA/ceRNA activity)Epigenetic regulation (interacting with chromatin modifiers such as EZH2)Modulation of cell proliferationRegulation of cell cycleApoptosis inhibitionPluripotency maintenance (in embryonic stem cells)Metabolic regulation (lipid metabolism, energy homeostasis)
04

Disease associations

Cancer (multiple types, including colorectal, hepatocellular, gastric, prostate, glioma, osteosarcoma, and others)Other (regulation in embryonic stem cells, possible roles in metabolic diseases)
05

Safety considerations

Targeting SNHG3 may affect critical cell regulatory pathways, including pluripotency networks, fundamental gene regulation, and potentially has off-target or pleiotropic effects[2][6]SNHG3 is widely dysregulated in cancers but also functional in non-malignant biology (e.g., stem cell pluripotency), raising concerns over specificity and therapeutic window[2][6]
06

Interacting drugs

Sorafenib
07

Biomarkers

SNHG3 expression levels as a prognostic biomarker for cancer progression and poor survival outcomes in several tumors (colorectal cancer, hepatocellular carcinoma, gastric cancer, glioma, prostate cancer)[1][4][5][7]Predictive marker for drug resistance (e.g., Sorafenib resistance in HCC)[3]

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