Target intelligence / Profile preview

Spike glycoprotein of SARS-CoV-2 (B.1.351 variant)

Molecular classification
Viral fusion protein, Class I viral fusion glycoprotein, Transmembrane glycoprotein, Receptor-binding protein, Other
01

Overview

The **spike glycoprotein of SARS-CoV-2 (B.1.351 variant)** is a large, trimeric, class I viral fusion protein found on the surface of the virus, responsible for mediating attachment to the host cell receptor ACE2 and subsequent fusion of the viral and host membranes[1][2][3][4][5]. The spike is composed of an S1 subunit, containing the receptor-binding domain (RBD) that recognizes ACE2, and an S2 subunit, which facilitates membrane fusion[1][3][5]. The B.1.351 ("Beta") variant is characterized by several mutations in the spike protein, including K417N, E484K, and N501Y, conferring increased binding affinity to ACE2 and significant resistance to many neutralizing antibodies[2][4]. As the principal surface antigen, the spike glycoprotein is the main target for diagnostic assays, monoclonal antibody therapeutics, and all clinically authorized COVID-19 vaccines[1][4][5]. Spike-targeted immune responses drive protection, but spike variations in B.1.351 reduce the efficacy of some antibodies and current vaccines due to immune escape[2][4]. Understanding spike structure–function and mutation impact is critical for COVID-19 therapeutic, diagnostic, and vaccine strategies[4][5].

Other names
Spike protein of SARS-CoV-2S glycoproteinS proteinSARS-CoV-2 spikeSARS-CoV-2 SS-proteinSpike glycoprotein (Beta variant)Spike protein (B.1.351)S glycoprotein (B.1.351)
02

Mechanism of action

Blockade of receptor-binding domain (RBD) interactions with ACE2 (preventing viral cell attachment); Inhibition of conformational changes required for membrane fusion; Induction of antibody-dependent effector functions; Vaccine-induced immune response (priming immune system to recognize spike)

03

Biological functions

Viral entry into host cellBinding to host cell receptor (ACE2)Membrane fusionDetermination of host and cell tropismImmune evasionAntigenic determinant for neutralizing antibodies
04

Disease associations

Infection (COVID-19)Immune escapeIncreased viral transmissionOther
05

Safety considerations

Spike mutations in B.1.351 associated with reduced efficacy of some neutralizing antibodies and vaccinesPotential for antibody-dependent enhancement (observed rarely in other viruses; not conclusively shown for SARS-CoV-2)Immune escape leading to reinfection or breakthrough infection
06

Interacting drugs

Neutralizing monoclonal antibodies (casirivimab, imdevimab, bamlanivimab, etesevimab, sotrovimab, tixagevimab, cilgavimab) [efficacy variable for B.1.351]

4 more in the full profile.

07

Biomarkers

Presence of anti-SARS-CoV-2 spike antibodiesNeutralizing antibody titers against SARS-CoV-2 spike protein (including B.1.351 variant)Detection of spike protein mutations (e.g., in diagnostics for variant surveillance)

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