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Spike glycoprotein S1 receptor-binding domain of SARS-CoV-2 Omicron variant (S1 RBD (Omicron))

Target
S1 RBD (Omicron)
Molecular classification
Viral surface glycoprotein domain, Receptor-binding domain, Part of class I viral fusion protein, Other
01

Overview

The spike glycoprotein S1 receptor-binding domain (RBD) of the SARS-CoV-2 Omicron variant is a region within the S1 subunit of the viral spike protein responsible for binding to the host angiotensin-converting enzyme 2 (ACE2) receptor, thereby facilitating viral entry into target cells[1][2][3][4]. The Omicron variant's RBD contains an unusually high number of mutations compared to previous variants, resulting in altered antigenic structure, enhanced ability to evade neutralizing antibodies elicited by prior infection or vaccination, and a requirement for higher ACE2 density for efficient membrane fusion[3][4]. These changes contribute to Omicron's increased transmissibility, partial resistance to existing monoclonal antibodies, and continued importance as a focus for vaccines and therapeutics development[2][3][4]. It remains a major target for neutralizing antibodies, serologic biomarkers, and therapeutic drugs aiming to block viral entry.

Other names
SARS-CoV-2 spike protein receptor-binding domain (Omicron)Spike protein RBD (Omicron)S1 RBD (B.1.1.529)SARS-CoV-2 Omicron S1 RBD
02

Mechanism of action

Drugs/antibodies inhibit viral entry by blocking the RBD-ACE2 interaction Monoclonal antibodies neutralize by directly binding RBD and preventing receptor engagement Vaccines elicit antibodies targeting RBD to prevent infection

03

Biological functions

Host cell recognitionVirus entry (mediating attachment to host ACE2 receptor)Antigenic determinant for neutralizing antibodiesImmune evasionOther
04

Disease associations

Infection (COVID-19)Increased transmissibilityImmune escape variantOther
05

Safety considerations

Immune evasion leading to reduced effectiveness of some antibodies and vaccinesPotential antigenic escape may limit duration of drug/vaccine efficacyAntibody-dependent enhancement has been a theoretical concern but not widely reported with approved drugs targeting this domain
06

Interacting drugs

Neutralizing monoclonal antibodies (e.g., sotrovimab, bebtelovimab, tixagevimab/cilgavimab, though Omicron shows varying resistance)

2 more in the full profile.

07

Biomarkers

Antibodies against RBD (S1-specific serologic assays for infection/vaccine response)Sequence or mutational profile of the Omicron spike/RBD for variant tracking

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