Target intelligence / Profile preview

Synaptojanin-1 (SYNJ1)

Target
SYNJ1
Molecular classification
Enzyme, Phosphoinositide phosphatase
01

Overview

Synaptojanin-1 is a dual-domain phosphoinositide phosphatase encoded by the *SYNJ1* gene on chromosome 21q22.2[4][5]. It contains an N-terminal SAC1-like domain and a central 5-phosphatase domain, both of which contribute to lipid homeostasis in neurons and other tissues[2][4]. The enzyme hydrolyzes specific phosphate groups from phosphoinositide lipids (notably PI(4,5)P2 and PI(3,4,5)P3), thereby regulating key steps in synaptic vesicle endocytosis and recycling, as well as membrane trafficking and autophagy[1][2][4][5]. The 145 kDa isoform is brain-enriched and has a critical role in clathrin-mediated endocytosis at neuronal synapses, while the 170 kDa isoform is more broadly expressed[2][4]. Mutations and altered expression in Synaptojanin-1 are implicated in a spectrum of human disorders, most notably early-onset Parkinson’s disease, epilepsy, and Down syndrome, highlighting its importance as a potential, yet currently untargeted, therapeutic protein[1][3][4][5].

Other names
Synaptojanin 1SYNJ1KIAA0910INPP5GPARK20Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1phosphoinositide 5-phosphataseinositol polyphosphate-5-phosphatase Ginositol 5'-phosphatase (synaptojanin 1)DEE53EIEE53
02

Mechanism of action

Inhibition of phosphoinositide 5-phosphatase activity Modulation of phosphatidylinositol signaling at synaptic membranes

03

Biological functions

Synaptic vesicle endocytosisMembrane traffickingRegulation of phosphoinositide signalingSynaptic vesicle recyclingAutophagy
04

Disease associations

Neurodegenerative disease (including Parkinson’s disease and Alzheimer’s disease)EpilepsyDown syndromeOther neurological and neuropsychiatric disorders (including autism, schizophrenia, bipolar disorder)
05

Safety considerations

Loss-of-function or pathogenic mutations cause severe neurological and neurodegenerative disease[1][4].Potential risk of interfering with essential synaptic functions and endocytosis if pharmacologically inhibited.
06

Interacting drugs

No well-established, clinically used drugs known to directly target Synaptojanin-1 as of September 2025; research inhibitors have been developed for experimental use[2].
07

Biomarkers

Genetic mutations in SYNJ1 (e.g., Y793C, R800C, Y849C) associated with early-onset Parkinson’s disease and severe epilepsy[1][3][4]Overexpression in Down syndrome brain tissue

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