Target intelligence / Profile preview

UBE3A antisense transcript RNA (UBE3A-ATS)

Target
UBE3A-ATS
Molecular classification
Long non-coding RNA (lncRNA), Imprinted antisense transcript
01

Overview

UBE3A antisense transcript RNA (UBE3A-ATS) is a long non-coding RNA expressed primarily from the paternal allele in neurons. It is transcribed antisense across the UBE3A gene locus and acts as an epigenetic silencer by interfering with the transcription of the paternal UBE3A gene, rendering it inactive in neurons. UBE3A protein loss due to this imprinting mechanism, when combined with maternal UBE3A mutations or deletions, causes Angelman syndrome—a severe neurodevelopmental disorder. Unsilencing the paternal UBE3A allele by inhibiting UBE3A-ATS, for example, with antisense oligonucleotides, is a promising therapeutic strategy under active investigation for Angelman syndrome. UBE3A-ATS is therefore considered a clinically actionable target for molecular therapies aiming to restore UBE3A expression and ameliorate disease symptoms[1][4][5][6][7].

Other names
UBE3A-ATSUbe3a-ATS (mouse)Ubiquitin ligase E3A-ATSUBE3A antisense RNALong non-coding UBE3A antisense transcript
02

Mechanism of action

Antisense oligonucleotides: Bind to UBE3A-ATS RNA, leading to its degradation or blocking its transcription, thereby *unsilencing* the paternal UBE3A allele and restoring UBE3A protein expression in neurons CRISPR-based genome or transcriptome editing: Target and reduce UBE3A-ATS RNA to relieve suppression of paternal UBE3A ATF/ZF-based transcriptional repression: Target UBE3A-ATS promoter region to inhibit antisense expression

03

Biological functions

Epigenetic regulationTranscriptional silencingRegulation of genomic imprinting
04

Disease associations

Neurodevelopmental diseaseAngelman syndrome
05

Safety considerations

Risk of off-target effects with nucleic acid-based therapies (ASOs, CRISPR)Possible immune responses to synthetic oligonucleotides or delivery vectorsUnknown long-term neurodevelopmental safety due to epigenetic interventions in the brainEnsuring sufficient distribution and effect in CNS/neurons while limiting peripheral or non-neuronal effects
06

Interacting drugs

Antisense oligonucleotides targeting UBE3A-ATS (e.g., experimental ASOs, no approved drug names as of latest data)

1 more in the full profile.

07

Biomarkers

UBE3A protein levels (for efficacy monitoring in Angelman syndrome clinical studies)UBE3A-ATS transcript level (for target engagement assessment)

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