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Viral RNA-dependent RNA polymerase with mRNA capping enzyme activities (viral L protein)

Target
viral L protein
Molecular classification
Enzyme, RNA-dependent RNA polymerase (RdRp), Nucleotidyltransferase (guanylyltransferase), Methyltransferase (guanine-N7 and 2′-O)
01

Overview

The viral RNA-dependent RNA polymerase (RdRp) with mRNA capping enzyme activities is a large, multifunctional enzyme complex required for the replication and transcription of the viral genome and capping of viral mRNAs[3][7]. The enzyme catalyzes RNA synthesis (polymerase activity), the transfer of a guanine nucleotide to the 5′ end of nascent viral transcripts (guanylyltransferase activity), methylation of the N7 position of guanine, and subsequent 2′-O-methylation of the first ribose, thereby forming the cap structure recognized by the host translation machinery and shielding viral RNA from immune detection. These activities are targets of direct-acting antivirals against a broad range of RNA viruses, including orthomyxoviruses, flaviviruses, and coronaviruses[7][3]. Inhibiting any of these steps can be detrimental to viral propagation, making the enzyme complex a prime candidate for therapeutic intervention.

Other names
Viral RNA-dependent RNA polymerase (RdRp)Viral L protein (in mononegavirales)Viral capping enzyme complexRNA guanylyltransferase (GTase)RNA (guanine-N7)-methyltransferasemRNA (nucleoside-2′-O)-methyltransferaseViral cap methyltransferase
02

Mechanism of action

Inhibition of RdRp: prevents viral RNA synthesis/replication (nucleoside analog chain-terminators, non-nucleoside inhibitors) Inhibition of mRNA capping enzymes: prevents addition of 5′ cap to viral mRNA, leading to transcript instability and loss of translational competence, as well as increased immune recognition (guanylyltransferase and methyltransferase inhibitors)

03

Biological functions

Viral RNA synthesis (genome replication and transcription)mRNA 5′-capping (guanylylation, N7 methylation, and 2′-O methylation)Evasion of host innate immune responses (by cap mimicry)
04

Disease associations

Infection (essential for replication of RNA viruses, including human and veterinary pathogens)
05

Safety considerations

Off-target effects: cytotoxicity due to inhibition of host (cellular) RNA capping enzymesResistance: high mutation rate of viral polymerase genes leads to drug escapeSelective pressure on virus may drive increased immune evasion
06

Interacting drugs

Remdesivir (inhibits RdRp)

4 more in the full profile.

07

Biomarkers

Detection of capped viral RNA (indicates enzyme activity)Levels of viral replication or viral mRNA in patient samples

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