Target intelligence / Profile preview

Protein phosphatase, Mg2+/Mn2+ dependent 1D (PPM1D)

Target
PPM1D
Molecular classification
Enzyme, Serine/threonine protein phosphatase, PP2C phosphatase family
01

Overview

Protein phosphatase, Mg2+/Mn2+ dependent 1D (PPM1D) is a serine/threonine protein phosphatase belonging to the PP2C family. Induced by p53 in response to cellular stress and DNA damage, it acts as a negative regulator of DNA damage response pathways by dephosphorylating critical proteins such as p53 and CHEK1, thereby enabling cells to exit checkpoint arrests. PPM1D is central to a feedback loop controlling cell cycle progression, apoptosis suppression, and genome integrity; its amplification and gain-of-function mutations are implicated in multiple cancers, making it a recognized therapeutic target. The enzyme is also linked to rare neurodevelopmental disorders (e.g., Jansen-de Vries Syndrome) through pathogenic variants. Allosteric inhibitors such as GSK2830371 modulate the function of PPM1D by stabilizing inactive conformations, providing proof-of-concept for drug targeting in oncology. Safety concerns arise due to its broad roles in cell stress responses and potential effects on genomic stability.

Other names
PPM1DWild-type p53-induced phosphatase 1WIP1PP2C-deltaProtein phosphatase 2C isoform deltaProtein phosphatase 1D magnesium-dependent, delta isoformProtein phosphatase magnesium-dependent 1 deltaProtein phosphatase 1DProtein phosphatase, Mg2+/Mn2+ dependent 1DProtein serine/threonine phosphatase Wip1
02

Mechanism of action

Allosteric inhibition (e.g., GSK2830371 binds flap domain and locks PPM1D into inactive conformation) Non-competitive inhibition (drugs can alter conformation without directly blocking active site) Potential substrate-competitive or catalytic site targeting under investigation

03

Biological functions

Negative regulation of p53 expressionCell cycle regulation (checkpoint release)DNA damage responseDephosphorylation of p53 and CHEK1Suppression of apoptosisMAPK/p38 dephosphorylationGenome integrity maintenanceGlobal heterochromatin silencing
04

Disease associations

Cancer (amplified/mutated in various tumors including breast cancer; oncoprotein role)Neurodevelopmental disease (Jansen-de Vries Syndrome caused by pathogenic variants)Potential relevance in other stress/pathway-related conditions (based on broader pathway regulation)
05

Safety considerations

Role in vital DNA damage and cell cycle checkpoint pathways, thus inhibition may induce off-target genomic instability or impaired apoptosisPotential risk of affecting global heterochromatin silencing and genomic integrityUnknown effects in non-tumor tissue—need for selectivity in therapy
06

Interacting drugs

GSK2830371 (potent and selective allosteric inhibitor; principal example)

1 more in the full profile.

07

Biomarkers

PPM1D amplification (notably in breast and other cancers)Truncating mutations distal to residue 400 (increase phosphatase activity, correlate with cancer and Jansen-de Vries Syndrome)Altered expression or activity as a biomarker for DNA damage response or p53 pathway modulation

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