Target intelligence / Profile preview

Class I and IIb histone deacetylase (HDAC)

Target
HDAC
Molecular classification
Enzyme, Histone modification enzyme, Epigenetic regulator
01

Overview

Class I and IIb histone deacetylases are subgroups of the histone deacetylase enzyme family involved in the removal of acetyl groups from lysine residues of histone and non-histone proteins. This enzymatic deacetylation promotes chromatin condensation, transcriptional repression, and regulation of numerous cellular processes, including gene expression, cell cycle progression, and apoptosis. Class I HDACs (HDAC1, HDAC2, HDAC3, HDAC8) are predominantly nuclear and strongly associated with the regulation of gene expression and cell proliferation, while class IIb HDACs (HDAC6, HDAC10) are mainly cytoplasmic and regulate processes such as α-tubulin deacetylation and protein trafficking. Dysregulation of these enzymes contributes to diverse diseases, notably cancer and neurodegenerative disorders. Selective HDAC inhibitors have been developed and approved as anticancer agents, though their clinical use is associated with notable toxicities due to widespread actions on both histone and non-histone proteins.

Other names
Histone deacetylases (general)HDAC1HDAC2HDAC3HDAC8 (Class I)HDAC6HDAC10 (Class IIb)zinc-dependent histone deacetylase
02

Mechanism of action

Inhibition of histone deacetylase activity, leading to increased acetylation of lysine residues on histone and non-histone proteins; Promotes chromatin relaxation and activation of gene transcription; Induction of cell cycle arrest and apoptosis in cancer cells; Modulation of protein acetylation affecting cell motility, protein aggregation, and immune synapse formation (notably for HDAC6)

03

Biological functions

Chromatin remodelingRegulation of gene expressionCell cycle controlApoptosisCell proliferationProtein deacetylation (including non-histone substrates such as α-tubulin for HDAC6)Regulation of cellular stress responses
04

Disease associations

Cancer (various types; due to abnormal gene silencing and cell cycle deregulation)Neurodegenerative diseases (e.g., Parkinson’s disease; aggregation of misfolded proteins and axonal transport deficits)Inflammatory diseasesPsychiatric disorders (e.g., schizophrenia, brain function in mood and cognition)
05

Safety considerations

Hematological toxicity (thrombocytopenia, neutropenia, anemia)Gastrointestinal toxicity (nausea, vomiting, diarrhea)Cardiotoxicity (QT prolongation)Off-target effects (due to broad histone and non-histone substrate range; especially with pan-HDAC inhibitors)Potential for neurological side effects (given roles in brain function/neuronal plasticity)
06

Interacting drugs

Vorinostat (SAHA)

7 more in the full profile.

07

Biomarkers

Levels of acetylated histone H3 or H4 in tissuesHDAC isoform expression (e.g., HDAC1, HDAC6 protein/mRNA levels)Specific downstream gene expression signatures (e.g., p21WAF1/CIP1)

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